Deepbind

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MIPT Bioinformatics Club #1. DeepBind - Predicting the sequence specificities of binding proteins - YouTube

CSCI 1850: Deep Learning in Genomics

Brown CS

Enhancing the interpretability of transcription factor binding site prediction using attention mechanism | Scientific Reports

Nature

DeepBindPoc: a deep learning method to rank ligand binding pockets using molecular vector representation [PeerJ]

PeerJ

cDeepbind: A context sensitive deep learning model of RNA-protein binding

mlcb.github.io

Summary -Knowing the sequence specificities of DNA- and RNA-binding proteins is essential for developing models of the regulatory processes in biological. - ppt download

SlidePlayer

IJMS | Free Full-Text | DeepD2V: A Novel Deep Learning-Based Framework for Predicting Transcription Factor Binding Sites from Combined DNA Sequence

MDPI

Predicting transcription factor binding sites using DNA shape features based on shared hybrid deep learning architecture: Molecular Therapy - Nucleic Acids

Cell Press

A) Comparison between beRBP-specific models, RBPmap, DeepBind and... | Download Scientific Diagram

ResearchGate

The Kipoi repository accelerates community exchange and reuse of predictive models for genomics | Nature Biotechnology

Nature

IJMS | Free Full-Text | Deep Artificial Neural Networks and Neuromorphic Chips for Big Data Analysis: Pharmaceutical and Bioinformatics Applications

MDPI

Fig 8-1.png

RNAInter

A survey on deep learning in DNA/RNA motif mining

Semantic Scholar

Accurate and sensitive quantification of protein-DNA binding affinity | PNAS

PNAS

Prediction of DNA binding proteins using local features and long-term dependencies with primary sequences based on deep learning [PeerJ]

PeerJ

Integrative approaches to improve the informativeness of deep learning models for human complex diseases | bioRxiv

bioRxiv

Predicting transcription factor binding sites using DNA shape features based on shared hybrid deep learning architecture: Molecular Therapy - Nucleic Acids

Cell Press

Fig 8-2.png

RNAInter

Genes | Free Full-Text | Uncovering the Relationship between Tissue-Specific TF-DNA Binding and Chromatin Features through a Transformer-Based Model

MDPI

Assessing deep learning algorithms in cis-regulatory motif finding based on genomic sequencing data | bioRxiv

bioRxiv

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